Distributed quantum file consolidation is disclosed. A controlling quantum computing system (QCS) determines to consolidate a quantum file that includes a plurality of qubits implemented on a plurality of quantum computing systems (QCSs) onto a target QCS, the plurality of qubits including at least a first qubit implemented on a first QCS of the plurality of QCSs. The controlling QCS causes a transfer of quantum information contained in each qubit of the plurality of qubits that is not currently implemented on the target QCS to a corresponding qubit on the target QCS. Quantum file update information that indicates the qubits that compose the quantum file are located on the target QCS is communicated to at least the first QCS.