beta
/Considering the remarkable phenotypic impact of deleting a single leucine residue in the signal peptide of PMEL, we wondered about what impact p.Leu18del might have on the processing of the signal peptide, the N-terminal end and overall length of the protein. For WT bovine PMEL (UniProt entry Q06154), the database annotation specifies a 24 amino acid (aa) signal peptide. To assess the potential impact of the deleted leucine, we applied signal peptide predictions for WT and p.Leu18del PMEL sequences (30). For both forms, presence of a signal peptide is predicted with a likelihood of 0.89 for WT and 0.85 for the mutated PMEL (Figure 7). The cleavage site for the WT is predicted between aa 26 and aa 27 (TEG-PR) which differs from the database annotation. More importantly, the cleavage site predictions for WT are also different compared to the p.Leu18del PMEL variant. For the variant, the cleavage site was predicted between aa 19 and aa 20 (VLA-VG) which also provided supporting evidence that the signal peptide of the PMEL deletion variant is processed. Hence, the deletion of leucine 18 in the signal peptide is predicted to cause the generation of an N-terminal domain that differs in length (plus six aas) from WT PMEL. These results prompted us to examine the functionality of the signal peptide in another N-terminal PMEL variant, p.Gly22Arg, that has been associated with coat color dilution in Charolais cattle (31). Similar to the p.Leu18 del mutation, the signal peptide appears to be functional with a predicted likelihood of 0.83 and cleavage site between aa 23 and 24, extending the N-terminal domain by two aas compared to WT PMEL (Figure 7).